well i fixed it thanks to some guy helping me on the chat rooms.
After following the osx guide and running jailbreak.jar, instead of rebooting and being jailbroken. It restarted and came back as a 1.1.2 that would request a restore.
No matter how many times I tried it always did the same and I was not pressing restore it was update.
It was fixed by running Independance again, which did something and now I have a working phone.
I suggest someone adds this to the guides or looks at why it was happening as others will have the problem.