I read that they play nicely well...but they didnt for me. I tried installing a theme via Customize but when I hit the respring button it came back to the theme i had installed via Winterboard, reboot still showed the winterboard theme. How can I install the themes and wallpapers from Customize?
If it's something I can fix via SSH please add a link on how to set up SSH

I am computer saavy enough to learn how i just need a good how-to thread to kick it off for me. So far all of my installing/modding has been via the GUIs (Cydia, Customize, Winterboard, etc)
Thanks in advance.